Progress on WormGUIDES
Shah PK, Santella A, Jacobo A, Siletti K, Hudspeth AJ, Bao Z. (2017). "An in toto approach to dissecting cellular interactions in complex tissues", Dev Cell, 43, 530-40.
LINK
Shah PK#, Tanner MR#, Kovacevic I, Rankin A, Marshall TE, Noblett N, Tran NN, Roenspies T, Hung J, Chen Z, Slatculescu C, Perkins TJ, Bao Z*, Colavita A* (2017). "PCP and SAX-3/Robo Pathways Cooperate to Regulate Convergent Extension-Based Nerve Cord Assembly in C. elegans", Dev Cell, 41, 195-203. LINK
Kumar A, Christensen R, Guo M, Chandris P, Duncan W, Wu Y, Santella A, Moyle M, Winter PW, Colón-Ramos D, Bao Z, Shroff H. (2016). "Using Stage- and Slit-Scanning to Improve Contrast and Optical Sectioning in Dual-View Inverted Light Sheet Microscopy (diSPIM)", Biol Bull, 231, 26-39. LINK
Christensen, R.P., Bokinsky, A., Santella, A., Wu, Y., Marquina-Solis, J., Guo, M, Kovacevic, I., Kumar, A., Winter, P.W., Tashakkori, N., McCreedy, E., Liu, H., McAuliffe, M., Mohler, W., Colón-Ramos, D.A., Bao, Z. & Shroff, H. (2015). "Untwisting the Caenorhabditis elegans embryo", eLife, 4. pii: e10070. doi: 10.7554/eLife.10070.. LINK
Santella, A., Catena, R., Kovacevic, I., Shah, P., Yu, Z., Marquina-Solis, J., Kumar, A., Wu, Y., Schaff, J., Colón-Ramos, D., Shroff, H., Mohler, W.A.* & Bao, Z.* (2015). "WormGUIDES: an interactive single-cell developmental atlas and tool for collaborative multidimensional data exploration", BMC Bioinformatics, 16, 189 PMC4459063. LINK
Kumar, A., Wu, Y., Christensen, R., Chandris, P., Gandler, W., McCreedy, E., Bokinsky, A., Colón-Ramos, D.A., Bao, Z., McAuliffe, M., Rondeau, G. & Shroff, H. (2014). "Dual-view plane illumination microscopy for rapid and spatially isotropic imaging", Nat Protoc, 9, 2555-73 PMC4386612. LINK
Santella, A., Du, Z. & Bao Z. (2014). "A semi-local neighborhood-based framework for probabilistic cell lineage tracing", BMC Bioinformatics, 15, 217 PMC4085468. LINK
Wu, Y., Christensen R., Colón-Ramos D., Shroff H. (2013). "Advanced optical imaging techniques for neurodevelopment", Curr Opin Neurobiol, 6, 1090-7 PMC3830703. LINK
Wu, Y., Wawrzusin, P., Senseney, J., Fischer, R.S., Christensen, R. Santella, A., York, A.G., Winter, P.W., Waterman, C.M., Bao, Z., Colón-Ramos, D.A., McAuliffe, M. & Shroff, H. (2013). "Spatially isotropic four-dimensional imaging with dual-view plane illumination microscopy", Nat Biotechnol, 231(1):26-39.31(11):1032-1038. LINK
Shah PK#, Tanner MR#, Kovacevic I, Rankin A, Marshall TE, Noblett N, Tran NN, Roenspies T, Hung J, Chen Z, Slatculescu C, Perkins TJ, Bao Z*, Colavita A* (2017). "PCP and SAX-3/Robo Pathways Cooperate to Regulate Convergent Extension-Based Nerve Cord Assembly in C. elegans", Dev Cell, 41, 195-203. LINK
Kumar A, Christensen R, Guo M, Chandris P, Duncan W, Wu Y, Santella A, Moyle M, Winter PW, Colón-Ramos D, Bao Z, Shroff H. (2016). "Using Stage- and Slit-Scanning to Improve Contrast and Optical Sectioning in Dual-View Inverted Light Sheet Microscopy (diSPIM)", Biol Bull, 231, 26-39. LINK
Christensen, R.P., Bokinsky, A., Santella, A., Wu, Y., Marquina-Solis, J., Guo, M, Kovacevic, I., Kumar, A., Winter, P.W., Tashakkori, N., McCreedy, E., Liu, H., McAuliffe, M., Mohler, W., Colón-Ramos, D.A., Bao, Z. & Shroff, H. (2015). "Untwisting the Caenorhabditis elegans embryo", eLife, 4. pii: e10070. doi: 10.7554/eLife.10070.. LINK
Santella, A., Catena, R., Kovacevic, I., Shah, P., Yu, Z., Marquina-Solis, J., Kumar, A., Wu, Y., Schaff, J., Colón-Ramos, D., Shroff, H., Mohler, W.A.* & Bao, Z.* (2015). "WormGUIDES: an interactive single-cell developmental atlas and tool for collaborative multidimensional data exploration", BMC Bioinformatics, 16, 189 PMC4459063. LINK
Kumar, A., Wu, Y., Christensen, R., Chandris, P., Gandler, W., McCreedy, E., Bokinsky, A., Colón-Ramos, D.A., Bao, Z., McAuliffe, M., Rondeau, G. & Shroff, H. (2014). "Dual-view plane illumination microscopy for rapid and spatially isotropic imaging", Nat Protoc, 9, 2555-73 PMC4386612. LINK
Santella, A., Du, Z. & Bao Z. (2014). "A semi-local neighborhood-based framework for probabilistic cell lineage tracing", BMC Bioinformatics, 15, 217 PMC4085468. LINK
Wu, Y., Christensen R., Colón-Ramos D., Shroff H. (2013). "Advanced optical imaging techniques for neurodevelopment", Curr Opin Neurobiol, 6, 1090-7 PMC3830703. LINK
Wu, Y., Wawrzusin, P., Senseney, J., Fischer, R.S., Christensen, R. Santella, A., York, A.G., Winter, P.W., Waterman, C.M., Bao, Z., Colón-Ramos, D.A., McAuliffe, M. & Shroff, H. (2013). "Spatially isotropic four-dimensional imaging with dual-view plane illumination microscopy", Nat Biotechnol, 231(1):26-39.31(11):1032-1038. LINK
Collaborations to Disseminate Technology and Results
